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Venkata Krishnan Ramaswamy
Venkata Krishnan Ramaswamy
Computational Chemistry Developer at Cresset software and discovery
Verified email at cresset-group.com
Title
Cited by
Cited by
Year
Molecular Rationale behind the Differential Substrate Specificity of Bacterial RND Multi-Drug Transporters
VK Ramaswamy, AV Vargiu, G Malloci, J Dreier, P Ruggerone
Scientific Reports, 2017
742017
Water-mediated interactions enable smooth substrate transport in a bacterial efflux pump
AV Vargiu, VK Ramaswamy, I Malvacio, G Malloci, U Kleinekath÷fer, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1862 (4), 836-845, 2018
492018
Computer simulations of the activity of RND efflux pumps
AV Vargiu, VK Ramaswamy, G Malloci, I Malvacio, A Atzori, P Ruggerone
Research in microbiology 169 (7-8), 384-392, 2018
402018
Molecular determinants of the promiscuity of MexB and MexY multidrug transporters of Pseudomonas aeruginosa
VK Ramaswamy, AV Vargiu, G Malloci, J Dreier, P Ruggerone
Frontiers in Microbiology 9, 1144, 2018
402018
A New Critical Conformational Determinant of Multidrug Efflux by an MFS Transporter
E Zomot, EH Yardeni, AV Vargiu, HK Tam, G Malloci, VK Ramaswamy, ...
Journal of molecular biology 430 (9), 1368-1385, 2018
382018
Computational modelling of efflux pumps and their inhibitors
VK Ramaswamy, P Cacciotto, G Malloci, AV Vargiu, P Ruggerone
Essays in biochemistry 61 (1), 141-156, 2017
372017
Deep Learning Protein Conformational Space with Convolutions and Latent Interpolations
VK Ramaswamy, SC Musson, CG Willcocks, MT Degiacomi
Physical Review X 11 (1), 011052, 2021
322021
Open Force Field BespokeFit: Automating Bespoke Torsion Parametrization At Scale
JT Horton, S Boothroyd, J Wagner, JA Mitchell, T Gokey, DL Dotson, ...
Journal of Chemical Information and Modeling 62 (22), 5622-5633, 2022
222022
Assessing therapeutic potential of molecules: molecular property diagnostic suite for tuberculosis (MPDS TB)
AS Gaur, A Bhardwaj, A Sharma, L John, MR Vivek, N Tripathi, ...
Journal of Chemical Sciences 129 (5), 515-531, 2017
202017
Insights into the homo-oligomerization properties of N-terminal coiled-coil domain of Ebola virus VP35 protein
VK Ramaswamy, F Di Palma, AV Vargiu, A Corona, D Piano, ...
Virus research 247, 61-70, 2018
192018
Relevance of Ebola virus VP35 homo-dimerization on the type I interferon cascade inhibition
F Di Palma, GL Daino, VK Ramaswamy, A Corona, A Frau, E Fanunza, ...
Antiviral Chemistry and Chemotherapy 27, 2040206619889220, 2019
172019
Multidrug efflux pumps and their inhibitors characterized by computational modeling
VK Ramaswamy, P Cacciotto, G Malloci, P Ruggerone, AV Vargiu
Efflux-mediated antimicrobial resistance in bacteria: Mechanisms, regulationá…, 2016
172016
Molecular Modeling of Multidrug Properties of Resistance Nodulation Division (RND) Transporters
P Cacciotto, VK Ramaswamy, G Malloci, P Ruggerone, AV Vargiu
Bacterial Multidrug Exporters, Methods in Molecular Biology 1700, 179-219, 2018
82018
Allophycocyanin A is a carbon dioxide receptor in the cyanobacterial phycobilisome
A GuillÚn-GarcÝa, SER Gibson, CJC Jordan, VK Ramaswamy, ...
Nature Communications 13 (1), 5289, 2022
62022
Structure based de novo design of IspD inhibitors as anti-tubercular agents
RA Varikoti, RP Gangwal, GV Dhoke, VK Ramaswamy, AT Sangamwar
Available from Nature Precedings <http://dx.doi.org/10.1038/npre.2012.7088.1> 1, 2012
52012
Common recognition topology of mex transporters of Pseudomonas aeruginosa revealed by molecular modelling
A Catte, V K Ramaswamy, AV Vargiu, G Malloci, A Bosin, P Ruggerone
Frontiers in Pharmacology 13, 4732, 2022
42022
Learning protein conformational space by enforcing physics with convolutions and latent interpolations
VK Ramaswamy, CG Willcocks, MT Degiacomi
arXiv preprint arXiv:1910.04543, 2019
2019
Water-mediated interactions enable smooth substrate transport in a bacterial efflux pump General subjects
AV Vargiu, VK Ramaswamy, I Malvacio, G Malloci, U Kleinekath÷fer, ...
2018
Insights into Ebola VP35 oligomerization from molecular simulations
F Di Palma, VK Ramaswamy, G Daino, A Frau, A Corona, L Zinzula, ...
ABSTRACTS OF PAPERS-AMERICAN CHEMICAL SOCIETY 255, 2018
2018
Molecular Rationale Behind the Differential Substrate Specificity of Homologous RND Transporters in E. coli and P. aeruginosa
VK Ramaswamy
UniversitÓ degli Studi di Cagliari, 2017
2017
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Articles 1–20