| Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012 | 13214 | 2012 |
| Differential analysis of gene regulation at transcript resolution with RNA-seq C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter Nature biotechnology 31 (1), 46-53, 2013 | 3908 | 2013 |
| Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses MN Cabili, C Trapnell, L Goff, M Koziol, B Tazon-Vega, A Regev, JL Rinn Genes & development 25 (18), 1915-1927, 2011 | 3817 | 2011 |
| Multiple knockout mouse models reveal lincRNAs are required for life and brain development M Sauvageau, LA Goff, S Lodato, B Bonev, AF Groff, C Gerhardinger, ... elife 2, e01749, 2013 | 753 | 2013 |
| Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014 | 706 | 2014 |
| DNMT1-interacting RNAs block gene-specific DNA methylation A Di Ruscio, AK Ebralidze, T Benoukraf, G Amabile, LA Goff, J Terragni, ... Nature 503 (7476), 371-376, 2013 | 600 | 2013 |
| Long noncoding RNAs regulate adipogenesis L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ... Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013 | 492 | 2013 |
| Differential regulation of microRNA stability S Bail, M Swerdel, H Liu, X Jiao, LA Goff, RP Hart, M Kiledjian Rna 16 (5), 1032-1039, 2010 | 392 | 2010 |
| Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification BS Clark, GL Stein-O’Brien, F Shiau, GH Cannon, E Davis-Marcisak, ... Neuron 102 (6), 1111-1126. e5, 2019 | 383 | 2019 |
| The microRNA miR-181 is a critical cellular metabolic rheostat essential for NKT cell ontogenesis and lymphocyte development and homeostasis J Henao-Mejia, A Williams, LA Goff, M Staron, P Licona-Limón, SM Kaech, ... Immunity 38 (5), 984-997, 2013 | 294 | 2013 |
| The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan JJ Kotzin, SP Spencer, SJ McCright, DBU Kumar, MA Collet, WK Mowel, ... Nature 537 (7619), 239-243, 2016 | 282 | 2016 |
| DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex BJ Molyneaux, LA Goff, AC Brettler, HH Chen, JR Brown, S Hrvatin, ... Neuron 85 (2), 275-288, 2015 | 257 | 2015 |
| Enter the matrix: factorization uncovers knowledge from omics GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ... Trends in Genetics 34 (10), 790-805, 2018 | 242 | 2018 |
| Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells MF Sabbagh, JS Heng, C Luo, RG Castanon, JR Nery, A Rattner, LA Goff, ... elife 7, e36187, 2018 | 236 | 2018 |
| MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells U Lakshmipathy, B Love, LA Goff, R Jörnsten, R Graichen, RP Hart, ... Stem cells and development 16 (6), 1003-1016, 2007 | 228 | 2007 |
| Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development Y Lu, F Shiau, W Yi, S Lu, Q Wu, JD Pearson, A Kallman, S Zhong, ... Developmental cell 53 (4), 473-491. e9, 2020 | 223 | 2020 |
| Linking RNA biology to lncRNAs LA Goff, JL Rinn Genome research 25 (10), 1456-1465, 2015 | 201 | 2015 |
| Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain LA Goff, AF Groff, M Sauvageau, Z Trayes-Gibson, DB Sanchez-Gomez, ... Proceedings of the National Academy of Sciences 112 (22), 6855-6862, 2015 | 169 | 2015 |
| Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors LA Goff, J Davila, MR Swerdel, JC Moore, RI Cohen, H Wu, YE Sun, ... PloS one 4 (9), e7192, 2009 | 162 | 2009 |
| Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species GL Stein-O’Brien, BS Clark, T Sherman, C Zibetti, Q Hu, R Sealfon, S Liu, ... Cell systems 8 (5), 395-411. e8, 2019 | 148 | 2019 |
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerified email at uw.edu
