Joy Scaria
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Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle
M Thomas, M Webb, S Ghimire, A Blair, K Olson, GJ Fenske, AT Fonder, ...
Scientific reports 7 (1), 12257, 2017
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches
DB Dhakan, A Maji, AK Sharma, R Saxena, J Pulikkan, T Grace, A Gomez, ...
Gigascience 8 (3), giz004, 2019
Microarray Identification of Clostridium difficile Core Components and Divergent Regions Associated with Host Origin
T Janvilisri, J Scaria, AD Thompson, A Nicholson, BM Limbago, LG Arroyo, ...
Journal of Bacteriology 191 (12), 3881-3891, 2009
Association of Flavonifractor plautii, a flavonoid-degrading bacterium, with the gut microbiome of colorectal cancer patients in India
A Gupta, DB Dhakan, A Maji, R Saxena, VP PK, S Mahajan, J Pulikkan, ...
MSystems 4 (6), 10.1128/msystems. 00438-19, 2019
Microarray for molecular typing of Salmonella enterica serovars
J Scaria, RUM Palaniappan, D Chiu, JA Phan, L Ponnala, P McDonough, ...
Molecular and Cellular Probes 22 (4), 238-243, 2008
Identification of Escherichia coli genes associated with urinary tract infections
BH Mao, YF Chang, J Scaria, CC Chang, LW Chou, N Tien, JJ Wu, ...
Journal of clinical microbiology 50 (2), 449-456, 2012
Analysis of ultra low genome conservation in Clostridium difficile
J Scaria, L Ponnala, T Janvilisri, W Yan, LA Mueller, YF Chang
PloS one 5 (12), e15147, 2010
Recent advancements in the development of modern probiotics for restoring human gut microbiome dysbiosis
R Kumar, U Sood, V Gupta, M Singh, J Scaria, R Lal
Indian journal of microbiology 60, 12-25, 2020
Antimicrobial-Resistant Escherichia coli from Environmental Waters in Northern Colorado
HB Haberecht, NJ Nealon, JR Gilliland, AV Holder, C Runyan, RC Oppel, ...
Journal of environmental and public health 2019, 2019
Antibiotic Resistance Genes Online (ARGO): A Database on vancomycin and βlactam resistance genes
J Scaria, U Chandramouli, SK Verma
Bioinformation 1 (1), 5, 2005
Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife
M Thomas, GJ Fenske, L Antony, S Ghimire, R Welsh, A Ramachandran, ...
Gut pathogens 9, 1-9, 2017
Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
C Talwar, S Nagar, R Kumar, J Scaria, R Lal, RK Negi
Scientific reports 10 (1), 1151, 2020
Transcriptional Profiling of Clostridium difficile and Caco-2 Cells during Infection
T Janvilisri, J Scaria, YF Chang
The Journal of infectious diseases 202 (2), 282-290, 2010
Identification of Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly
S Ghimire, C Roy, S Wongkuna, L Antony, A Maji, MC Keena, A Foley, ...
Msystems 5 (1), 10.1128/msystems. 00620-19, 2020
The flavonoid metabolite 2, 4, 6-trihydroxybenzoic acid is a CDK inhibitor and an anti-proliferative agent: A potential role in cancer prevention
R Sankaranarayanan, CK Valiveti, DR Kumar, S Van Slambrouck, ...
Cancers 11 (3), 427, 2019
Clostridium difficile transcriptome analysis using pig ligated loop model reveals modulation of pathways not modulated in vitro
J Scaria, T Janvilisri, S Fubini, RD Gleed, SP McDonough, YF Chang
Journal of Infectious Diseases 203 (11), 1613-1620, 2011
Proteomic Comparison of Historic and Recently Emerged Hypervirulent Clostridium difficile Strains
JW Chen, J Scaria, C Mao, B Sobral, S Zhang, T Lawley, YF Chang
Journal of proteome research 12 (3), 1151-1161, 2013
Immunogenicity and protective efficacy of the Mycobacterium avium subsp. paratuberculosis attenuated mutants against challenge in a mouse model
JW Chen, SM Faisal, S Chandra, SP McDonough, MAS Moreira, J Scaria, ...
Vaccine 30 (19), 3015-3025, 2012
Comparative nutritional and chemical phenome of Clostridium difficile isolates determined using phenotype microarrays
J Scaria, JW Chen, N Useh, H He, SP McDonough, C Mao, B Sobral, ...
International Journal of Infectious Diseases 27, 20-25, 2014
Amish (rural) vs. Non-amish (urban) infant fecal microbiotas are highly diverse and their transplantation lead to differences in mucosal immune maturation in a humanizedá…
S Dhakal, L Wang, L Antony, J Rank, P Bernardo, S Ghimire, K Bondra, ...
Frontiers in Immunology, 1509, 2019
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