| Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle M Thomas, M Webb, S Ghimire, A Blair, K Olson, GJ Fenske, AT Fonder, ... Scientific reports 7 (1), 12257, 2017 | 126 | 2017 |
| The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches DB Dhakan, A Maji, AK Sharma, R Saxena, J Pulikkan, T Grace, A Gomez, ... Gigascience 8 (3), giz004, 2019 | 124 | 2019 |
| Microarray Identification of Clostridium difficile Core Components and Divergent Regions Associated with Host Origin T Janvilisri, J Scaria, AD Thompson, A Nicholson, BM Limbago, LG Arroyo, ... Journal of Bacteriology 191 (12), 3881-3891, 2009 | 91 | 2009 |
| Association of Flavonifractor plautii, a flavonoid-degrading bacterium, with the gut microbiome of colorectal cancer patients in India A Gupta, DB Dhakan, A Maji, R Saxena, VP PK, S Mahajan, J Pulikkan, ... MSystems 4 (6), 10.1128/msystems. 00438-19, 2019 | 86 | 2019 |
| Microarray for molecular typing of Salmonella enterica serovars J Scaria, RUM Palaniappan, D Chiu, JA Phan, L Ponnala, P McDonough, ... Molecular and Cellular Probes 22 (4), 238-243, 2008 | 74 | 2008 |
| Identification of Escherichia coli genes associated with urinary tract infections BH Mao, YF Chang, J Scaria, CC Chang, LW Chou, N Tien, JJ Wu, ... Journal of clinical microbiology 50 (2), 449-456, 2012 | 68 | 2012 |
| Analysis of ultra low genome conservation in Clostridium difficile J Scaria, L Ponnala, T Janvilisri, W Yan, LA Mueller, YF Chang PloS one 5 (12), e15147, 2010 | 68 | 2010 |
| Recent advancements in the development of modern probiotics for restoring human gut microbiome dysbiosis R Kumar, U Sood, V Gupta, M Singh, J Scaria, R Lal Indian journal of microbiology 60, 12-25, 2020 | 67 | 2020 |
| Antimicrobial-Resistant Escherichia coli from Environmental Waters in Northern Colorado HB Haberecht, NJ Nealon, JR Gilliland, AV Holder, C Runyan, RC Oppel, ... Journal of environmental and public health 2019, 2019 | 67 | 2019 |
| Antibiotic Resistance Genes Online (ARGO): A Database on vancomycin and βlactam resistance genes J Scaria, U Chandramouli, SK Verma Bioinformation 1 (1), 5, 2005 | 62 | 2005 |
| Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife M Thomas, GJ Fenske, L Antony, S Ghimire, R Welsh, A Ramachandran, ... Gut pathogens 9, 1-9, 2017 | 56 | 2017 |
| Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes C Talwar, S Nagar, R Kumar, J Scaria, R Lal, RK Negi Scientific reports 10 (1), 1151, 2020 | 53 | 2020 |
| Transcriptional Profiling of Clostridium difficile and Caco-2 Cells during Infection T Janvilisri, J Scaria, YF Chang The Journal of infectious diseases 202 (2), 282-290, 2010 | 49 | 2010 |
| Identification of Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly S Ghimire, C Roy, S Wongkuna, L Antony, A Maji, MC Keena, A Foley, ... Msystems 5 (1), 10.1128/msystems. 00620-19, 2020 | 47 | 2020 |
| The flavonoid metabolite 2, 4, 6-trihydroxybenzoic acid is a CDK inhibitor and an anti-proliferative agent: A potential role in cancer prevention R Sankaranarayanan, CK Valiveti, DR Kumar, S Van Slambrouck, ... Cancers 11 (3), 427, 2019 | 46 | 2019 |
| Clostridium difficile transcriptome analysis using pig ligated loop model reveals modulation of pathways not modulated in vitro J Scaria, T Janvilisri, S Fubini, RD Gleed, SP McDonough, YF Chang Journal of Infectious Diseases 203 (11), 1613-1620, 2011 | 45 | 2011 |
| Proteomic Comparison of Historic and Recently Emerged Hypervirulent Clostridium difficile Strains JW Chen, J Scaria, C Mao, B Sobral, S Zhang, T Lawley, YF Chang Journal of proteome research 12 (3), 1151-1161, 2013 | 42 | 2013 |
| Immunogenicity and protective efficacy of the Mycobacterium avium subsp. paratuberculosis attenuated mutants against challenge in a mouse model JW Chen, SM Faisal, S Chandra, SP McDonough, MAS Moreira, J Scaria, ... Vaccine 30 (19), 3015-3025, 2012 | 32 | 2012 |
| Comparative nutritional and chemical phenome of Clostridium difficile isolates determined using phenotype microarrays J Scaria, JW Chen, N Useh, H He, SP McDonough, C Mao, B Sobral, ... International Journal of Infectious Diseases 27, 20-25, 2014 | 31 | 2014 |
| Amish (rural) vs. Non-amish (urban) infant fecal microbiotas are highly diverse and their transplantation lead to differences in mucosal immune maturation in a humanized … S Dhakal, L Wang, L Antony, J Rank, P Bernardo, S Ghimire, K Bondra, ... Frontiers in Immunology, 1509, 2019 | 28 | 2019 |
Sudeep GhimireDepartment of Pathology, University of Iowa, Iowa City, IAVerified email at uiowa.edu
