| Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations W Zheng, C Zhang, Y Li, R Pearce, EW Bell, Y Zhang Cell reports methods 1 (3), 2021 | 462 | 2021 |
| I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction X Zhou, W Zheng, Y Li, R Pearce, C Zhang, EW Bell, G Zhang, Y Zhang Nature Protocols 17 (10), 2326-2353, 2022 | 276 | 2022 |
| Deep‐learning contact‐map guided protein structure prediction in CASP13 W Zheng, Y Li, C Zhang, R Pearce, SM Mortuza, Y Zhang Proteins: Structure, Function, and Bioinformatics 87 (12), 1149-1164, 2019 | 222 | 2019 |
| LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins W Zheng, C Zhang, Q Wuyun, R Pearce, Y Li, Y Zhang Nucleic acids research 47 (W1), W429-W436, 2019 | 154 | 2019 |
| Deep learning techniques have significantly impacted protein structure prediction and protein design R Pearce, Y Zhang Current opinion in structural biology 68, 194-207, 2021 | 127 | 2021 |
| Toward the solution of the protein structure prediction problem R Pearce, Y Zhang Journal of Biological Chemistry 297 (1), 2021 | 119 | 2021 |
| De novo design of protein peptides to block association of the SARS-CoV-2 spike protein with human ACE2 X Huang, R Pearce, Y Zhang Aging (Albany NY) 12 (12), 11263, 2020 | 119* | 2020 |
| EvoEF2: accurate and fast energy function for computational protein design X Huang, R Pearce, Y Zhang Bioinformatics 36 (4), 1135-1142, 2020 | 89 | 2020 |
| EvoDesign: designing protein–protein binding interactions using evolutionary interface profiles in conjunction with an optimized physical energy function R Pearce, X Huang, D Setiawan, Y Zhang Journal of molecular biology 431 (13), 2467-2476, 2019 | 75 | 2019 |
| Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions SM Mortuza, W Zheng, C Zhang, Y Li, R Pearce, Y Zhang Nature communications 12 (1), 5011, 2021 | 74 | 2021 |
| FASPR: an open-source tool for fast and accurate protein side-chain packing X Huang, R Pearce, Y Zhang Bioinformatics 36 (12), 3758-3765, 2020 | 69 | 2020 |
| De Novo RNA Tertiary Structure Prediction at Atomic Resolution Using Geometric Potentials from Deep Learning R Pearce, GS Omenn, Y Zhang BioRxiv, 2022.05. 15.491755, 2022 | 62 | 2022 |
| Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14 W Zheng, Y Li, C Zhang, X Zhou, R Pearce, EW Bell, X Huang, Y Zhang Proteins: Structure, Function, and Bioinformatics 89 (12), 1734-1751, 2021 | 59 | 2021 |
| FUpred: detecting protein domains through deep-learning-based contact map prediction W Zheng, X Zhou, Q Wuyun, R Pearce, Y Li, Y Zhang Bioinformatics 36 (12), 3749-3757, 2020 | 52 | 2020 |
| Detecting distant-homology protein structures by aligning deep neural-network based contact maps W Zheng, Q Wuyun, Y Li, SM Mortuza, C Zhang, R Pearce, J Ruan, ... PLoS computational biology 15 (10), e1007411, 2019 | 51 | 2019 |
| SSIPe: accurately estimating protein–protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function X Huang, W Zheng, R Pearce, Y Zhang Bioinformatics 36 (8), 2429-2437, 2020 | 50 | 2020 |
| Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction Y Li, C Zhang, C Feng, R Pearce, P Lydia Freddolino, Y Zhang Nature Communications 14 (1), 5745, 2023 | 45 | 2023 |
| Identifying the zoonotic origin of SARS-CoV-2 by modeling the binding affinity between the spike receptor-binding domain and host ACE2 X Huang, C Zhang, R Pearce, GS Omenn, Y Zhang Journal of proteome research 19 (12), 4844-4856, 2020 | 39 | 2020 |
| Effect of the degree of glycation on the stability and aggregation of bovine serum albumin X Liu, J Liu, W Zhang, R Pearce, M Chen, T Zhang, B Liu Food Hydrocolloids 106, 105892, 2020 | 29 | 2020 |
| Computational design of SARS-CoV-2 spike glycoproteins to increase immunogenicity by T cell epitope engineering E Ong, X Huang, R Pearce, Y Zhang, Y He Computational and structural biotechnology journal 19, 518-529, 2021 | 24 | 2021 |
Yang ZhangNational University of SingaporeVerified email at nus.edu.sg
