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Robin Pearce
Robin Pearce
Verified email at umich.edu
Title
Cited by
Cited by
Year
Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations
W Zheng, C Zhang, Y Li, R Pearce, EW Bell, Y Zhang
Cell reports methods 1 (3), 2021
3662021
Deep‐learning contact‐map guided protein structure prediction in CASP13
W Zheng, Y Li, C Zhang, R Pearce, SM Mortuza, Y Zhang
Proteins: Structure, Function, and Bioinformatics 87 (12), 1149-1164, 2019
2052019
LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins
W Zheng, C Zhang, Q Wuyun, R Pearce, Y Li, Y Zhang
Nucleic acids research 47 (W1), W429-W436, 2019
1382019
I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction
X Zhou, W Zheng, Y Li, R Pearce, C Zhang, EW Bell, G Zhang, Y Zhang
Nature Protocols 17 (10), 2326-2353, 2022
1322022
De novo design of protein peptides to block association of the SARS-CoV-2 spike protein with human ACE2
X Huang, R Pearce, Y Zhang
Aging (Albany NY) 12 (12), 11263, 2020
113*2020
Deep learning techniques have significantly impacted protein structure prediction and protein design
R Pearce, Y Zhang
Current opinion in structural biology 68, 194-207, 2021
1032021
Toward the solution of the protein structure prediction problem
R Pearce, Y Zhang
Journal of Biological Chemistry 297 (1), 2021
982021
EvoEF2: accurate and fast energy function for computational protein design
X Huang, R Pearce, Y Zhang
Bioinformatics 36 (4), 1135-1142, 2020
822020
EvoDesign: designing protein–protein binding interactions using evolutionary interface profiles in conjunction with an optimized physical energy function
R Pearce, X Huang, D Setiawan, Y Zhang
Journal of molecular biology 431 (13), 2467-2476, 2019
692019
Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions
SM Mortuza, W Zheng, C Zhang, Y Li, R Pearce, Y Zhang
Nature communications 12 (1), 5011, 2021
572021
Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14
W Zheng, Y Li, C Zhang, X Zhou, R Pearce, EW Bell, X Huang, Y Zhang
Proteins: Structure, Function, and Bioinformatics 89 (12), 1734-1751, 2021
562021
FASPR: an open-source tool for fast and accurate protein side-chain packing
X Huang, R Pearce, Y Zhang
Bioinformatics 36 (12), 3758-3765, 2020
532020
Detecting distant-homology protein structures by aligning deep neural-network based contact maps
W Zheng, Q Wuyun, Y Li, SM Mortuza, C Zhang, R Pearce, J Ruan, ...
PLoS computational biology 15 (10), e1007411, 2019
502019
FUpred: detecting protein domains through deep-learning-based contact map prediction
W Zheng, X Zhou, Q Wuyun, R Pearce, Y Li, Y Zhang
Bioinformatics 36 (12), 3749-3757, 2020
482020
SSIPe: accurately estimating protein–protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function
X Huang, W Zheng, R Pearce, Y Zhang
Bioinformatics 36 (8), 2429-2437, 2020
432020
De Novo RNA Tertiary Structure Prediction at Atomic Resolution Using Geometric Potentials from Deep Learning
R Pearce, GS Omenn, Y Zhang
BioRxiv, 2022.05. 15.491755, 2022
412022
Identifying the zoonotic origin of SARS-CoV-2 by modeling the binding affinity between the spike receptor-binding domain and host ACE2
X Huang, C Zhang, R Pearce, GS Omenn, Y Zhang
Journal of proteome research 19 (12), 4844-4856, 2020
372020
Computational design of SARS-CoV-2 spike glycoproteins to increase immunogenicity by T cell epitope engineering
E Ong, X Huang, R Pearce, Y Zhang, Y He
Computational and structural biotechnology journal 19, 518-529, 2021
232021
Effect of the degree of glycation on the stability and aggregation of bovine serum albumin
X Liu, J Liu, W Zhang, R Pearce, M Chen, T Zhang, B Liu
Food hydrocolloids 106, 105892, 2020
222020
A new protocol for atomic-level protein structure modeling and refinement using low-to-medium resolution Cryo-EM density maps
B Zhang, X Zhang, R Pearce, HB Shen, Y Zhang
Journal of molecular biology 432 (19), 5365-5377, 2020
202020
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