Max A. Alekseyev
Cited by
Cited by
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Lecture Notes in Computer Science 7821, 158-170, 2013
Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 2015
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
SI Nikolenko, AI Korobeynikov, MA Alekseyev
BMC Genomics 14 (Suppl 1), S7, 2013
Splicing graphs and EST assembly problem
S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner
Bioinformatics 18 (Suppl 1), 181-188, 2002
Breakpoint graphs and ancestral genome reconstructions
M Alekseyev, PA Pevzner
Genome research 19 (5), 943-957, 2009
Multi-break rearrangements and chromosomal evolution
MA Alekseyev, PA Pevzner
Theoretical Computer Science 395 (2-3), 193-202, 2008
Colored de Bruijn graphs and the genome halving problem
MA Alekseyev, PA Pevzner
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 98-107, 2007
Reconstruction of ancestral genomes in presence of gene gain and loss
P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev
Journal of Computational Biology 23 (3), 150-164, 2016
Are there rearrangement hotspots in the human genome?
MA Alekseyev, PA Pevzner
PLoS Computational Biology 3 (11), e209, 2007
On approximation of groups, group actions, and Hopf algebras
MA Alekseev, LY Glebskii, EI Gordon
Journal of Mathematical Sciences 107 (5), 4305-4332, 2001
Multi-break rearrangements and breakpoint re-uses: from circular to linear genomes
MA Alekseyev
Journal of Computational Biology 15 (8), 1117-1131, 2008
Whole genome duplications, multi-break rearrangements, and genome halving problem
MA Alekseyev, PA Pevzner
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete …, 2007
Comparative genomics reveals birth and death of fragile regions in mammalian evolution
MA Alekseyev, PA Pevzner
Genome Biology 11 (11), 1-15, 2010
Phylogenetic analysis of genome rearrangements among five mammalian orders
H Luo, W Arndt, Y Zhang, G Shi, MA Alekseyev, J Tang, AL Hughes, ...
Molecular phylogenetics and evolution 65 (3), 871-882, 2012
Whole genome duplications and contracted breakpoint graphs
MA Alekseyev, PA Pevzner
SIAM Journal on Computing 36 (6), 1748, 2007
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ...
BMC biology 18 (1), 1-20, 2020
Scaffold assembly based on genome rearrangement analysis
S Aganezov, N Sitdykova, AGC Consortium, MA Alekseyev
Computational biology and chemistry 57, 46-53, 2015
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly
S Pham, D Antipov, A Sirotkin, G Tesler, P Pevzner, M Alekseyev
Journal of Computational Biology 20 (4), 359-371, 2013
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