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Max A. Alekseyev
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
210792012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11542013
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Lecture Notes in Computer Science 7821, 158-170, 2013
796*2013
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 1258522, 2015
5822015
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
SI Nikolenko, AI Korobeynikov, MA Alekseyev
BMC Genomics 14 (Suppl 1), S7, 2013
4772013
Splicing graphs and EST assembly problem
S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner
Bioinformatics 18 (Suppl 1), 181-188, 2002
2792002
Breakpoint graphs and ancestral genome reconstructions
M Alekseyev, PA Pevzner
Genome research 19 (5), 943-957, 2009
1692009
Reconstruction of ancestral genomes in presence of gene gain and loss
P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev
Journal of Computational Biology 23 (3), 150-164, 2016
722016
Multi-break rearrangements and chromosomal evolution
MA Alekseyev, PA Pevzner
Theoretical Computer Science 395 (2-3), 193-202, 2008
722008
Colored de Bruijn graphs and the genome halving problem
MA Alekseyev, PA Pevzner
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 98-107, 2007
672007
Are there rearrangement hotspots in the human genome?
MA Alekseyev, PA Pevzner
PLoS Computational Biology 3 (11), e209, 2007
522007
On approximation of groups, group actions, and Hopf algebras
MA Alekseev, LY Glebskii, EI Gordon
Journal of Mathematical Sciences 107, 4305-4332, 2001
422001
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ...
BMC biology 18, 1-20, 2020
352020
Multi-break rearrangements and breakpoint re-uses: from circular to linear genomes
MA Alekseyev
Journal of Computational Biology 15 (8), 1117-1131, 2008
342008
Whole genome duplications, multi-break rearrangements, and genome halving problem
MA Alekseyev, PA Pevzner
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete …, 2007
342007
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly
S Pham, D Antipov, A Sirotkin, G Tesler, P Pevzner, M Alekseyev
Journal of Computational Biology 20 (4), 359-371, 2013
282013
Comparative genomics reveals birth and death of fragile regions in mammalian evolution
MA Alekseyev, PA Pevzner
Genome Biology 11 (11), 1-15, 2010
282010
Phylogenetic analysis of genome rearrangements among five mammalian orders
H Luo, W Arndt, Y Zhang, G Shi, MA Alekseyev, J Tang, AL Hughes, ...
Molecular phylogenetics and evolution 65 (3), 871-882, 2012
272012
On the intersections of Fibonacci, Pell, and Lucas numbers
MA Alekseyev
INTEGERS 11 (3), 239-259, 2011
272011
Whole genome duplications and contracted breakpoint graphs
MA Alekseyev, PA Pevzner
SIAM Journal on Computing 36 (6), 1748, 2007
252007
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