| Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos Z Li, RM Adams, K Chourey, GB Hurst, RL Hettich, C Pan Journal of proteome research 11 (3), 1582-1590, 2012 | 361 | 2012 |
| Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms S Diamond, PF Andeer, Z Li, A Crits-Christoph, D Burstein, ... Nature microbiology 4 (8), 1356-1367, 2019 | 151 | 2019 |
| Comparative metagenomics of toxic freshwater cyanobacteria bloom communities on two continents MM Steffen, Z Li, TC Effler, LJ Hauser, GL Boyer, SW Wilhelm Public Library of Science 7 (8), e44002, 2012 | 149 | 2012 |
| Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil Q Yao, Z Li, Y Song, SJ Wright, X Guo, SG Tringe, MM Tfaily, L Paša-Tolić, ... Nature ecology & evolution 2 (3), 499-509, 2018 | 130 | 2018 |
| Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota W Xiong, PE Abraham, Z Li, C Pan, RL Hettich Proteomics 15 (20), 3424-3438, 2015 | 124 | 2015 |
| Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone CN Butterfield, Z Li, PF Andeer, S Spaulding, BC Thomas, A Singh, ... PeerJ 4, e2687, 2016 | 104 | 2016 |
| Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis MM Steffen, SP Dearth, BD Dill, Z Li, KM Larsen, SR Campagna, ... The ISME journal 8 (10), 2080-2092, 2014 | 101 | 2014 |
| Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community Z Li, Y Wang, Q Yao, NB Justice, TH Ahn, D Xu, RL Hettich, JF Banfield, ... Nature communications 5 (1), 4405, 2014 | 68 | 2014 |
| Elevated temperature alters proteomic responses of individual organisms within a biofilm community AC Mosier, Z Li, BC Thomas, RL Hettich, C Pan, JF Banfield The ISME journal 9 (1), 180-194, 2015 | 62 | 2015 |
| Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acid mine drainage AC Mosier, CS Miller, KR Frischkorn, RA Ohm, Z Li, K LaButti, A Lapidus, ... Frontiers in Microbiology 7, 238, 2016 | 57 | 2016 |
| Phylogenetically conserved resource partitioning in the coastal microbial loop S Bryson, Z Li, F Chavez, PK Weber, J Pett-Ridge, RL Hettich, C Pan, ... The ISME journal 11 (12), 2781-2792, 2017 | 55 | 2017 |
| Microbial community structure–function relationships in yaquina bay estuary reveal spatially distinct carbon and nitrogen cycling capacities B Kieft, Z Li, S Bryson, BC Crump, R Hettich, C Pan, X Mayali, RS Mueller Frontiers in Microbiology 9, 372069, 2018 | 48 | 2018 |
| Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal‐endobacterial system Z Li, Q Yao, SP Dearth, MR Entler, HF Castro Gonzalez, JK Uehling, ... Environmental microbiology 19 (3), 1041-1053, 2017 | 46 | 2017 |
| 15N‐ and 2H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity NB Justice, Z Li, Y Wang, SE Spaudling, AC Mosier, RL Hettich, C Pan, ... Environmental microbiology 16 (10), 3224-3237, 2014 | 44 | 2014 |
| Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits B Kieft, Z Li, S Bryson, RL Hettich, C Pan, X Mayali, RS Mueller Proceedings of the national academy of sciences 118 (41), e2101178118, 2021 | 41 | 2021 |
| Sipros/ProRata: a versatile informatics system for quantitative community proteomics Y Wang, TH Ahn, Z Li, C Pan Bioinformatics 29 (16), 2064-2065, 2013 | 38 | 2013 |
| Strigolactone-Regulated Proteins Revealed by iTRAQ-Based Quantitative Proteomics in Arabidopsis Z Li, O Czarnecki, K Chourey, J Yang, GA Tuskan, GB Hurst, C Pan, ... Journal of proteome research 13 (3), 1359-1372, 2014 | 32 | 2014 |
| Proteomic stable isotope probing reveals taxonomically distinct patterns in amino acid assimilation by coastal marine bacterioplankton S Bryson, Z Li, J Pett-Ridge, RL Hettich, X Mayali, C Pan, RS Mueller Msystems 1 (2), e00027-15, 2016 | 30 | 2016 |
| Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol Z Li, Q Yao, X Guo, A Crits-Christoph, MA Mayes, WJH IV, SL Lebeis, ... Frontiers in microbiology 10, 2706, 2019 | 26 | 2019 |
| Sipros Ensemble improves database searching and filtering for complex metaproteomics X Guo, Z Li, Q Yao, RS Mueller, JK Eng, DL Tabb, WJ Hervey IV, C Pan Bioinformatics 34 (5), 795-802, 2018 | 26 | 2018 |
